ophWaveAberration.h

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#pragma once
#ifndef __OphWaveAberration_h
#define __OphWaveAberration_h

#include "ophRec.h"
#include <iostream>
#include <fstream>
#include <complex>
#include <cmath>
#include <memory>
#include <algorithm>
#include <vector>
#include "tinyxml2.h"
#include "sys.h"

using namespace std;





class RECON_DLL ophWaveAberration : public ophRec
{
private :
    Real waveLength;
    
    Real pixelPitchX;
    Real pixelPitchY;
    int nOrder; 
    int mFrequency; 
    Real zernikeCoefficent[45];

public:

    oph::uint resolutionX;
    oph::uint resolutionY;
    oph::Complex<Real> ** complex_W;


    ophWaveAberration();
    ~ophWaveAberration();

    bool readConfig(const char* fname);

    
    Real factorial(double x);
    void imresize(double **X, int Nx, int Ny, int nx, int ny, double **Y); 
    double ** calculateZernikePolynomial(double n, double m, vector<double> x, vector<double> y, double d);
    void accumulateZernikePolynomial();
    void Free2D(oph::Complex<Real> ** doublePtr);
    void saveAberration(const char* fname);
    void readAberration(const char* fname);
    virtual bool loadAsOhc(const char* fname);

    void ophFree(void);
};

#endif