ophWaveAberration Class Reference

Wave Aberration module. More...

#include <ophWaveAberration.h>

Inheritance diagram for ophWaveAberration:

Collaboration diagram for ophWaveAberration:

Public Member Functions
	ophWaveAberration ()
	Constructor. More...
	~ophWaveAberration ()
	Destructor. More...
bool	readConfig (const char *fname)
	read configuration from a configration file More...
Real	factorial (double x)
	Factorial using recursion. More...
void	imresize (double **X, int Nx, int Ny, int nx, int ny, double **Y)
	Resizes 2D data using bilinear interpolation. More...
double **	calculateZernikePolynomial (double n, double m, vector< double > x, vector< double > y, double d)
	Calculates Zernike polynomial. More...
void	accumulateZernikePolynomial ()
	Sums up the calculated Zernike polynomials. More...
void	Free2D (oph::Complex< Real > **doublePtr)
	deletes 2D memory array using double pointer More...
void	saveAberration (const char *fname)
	saves the 2D data array of a wave aberration into a file More...
void	readAberration (const char *fname)
	reads the 2D data array of a wave aberration from a file More...
virtual bool	loadAsOhc (const char *fname)
	Function to read OHC file. More...
void	ophFree (void)
	Pure virtual function for override in child classes. More...
	ophWaveAberration ()
	Constructor. More...
	~ophWaveAberration ()
	Destructor. More...
bool	readConfig (const char *fname)
	read configuration from a configration file More...
Real	factorial (double x)
	Factorial using recursion. More...
void	imresize (double **X, int Nx, int Ny, int nx, int ny, double **Y)
	Resizes 2D data using bilinear interpolation. More...
double **	calculateZernikePolynomial (double n, double m, vector< double > x, vector< double > y, double d)
	Calculates Zernike polynomial. More...
void	accumulateZernikePolynomial ()
	Sums up the calculated Zernike polynomials. More...
void	Free2D (oph::Complex< Real > **doublePtr)
	deletes 2D memory array using double pointer More...
void	saveAberration (const char *fname)
	saves the 2D data array of a wave aberration into a file More...
void	readAberration (const char *fname)
	reads the 2D data array of a wave aberration from a file More...
virtual bool	loadAsOhc (const char *fname)
	Function to read OHC file. More...
void	ophFree (void)
	Pure virtual function for override in child classes. More...
	ophWaveAberration ()
	Constructor. More...
	~ophWaveAberration ()
	Destructor. More...
bool	readConfig (const char *fname)
	read configuration from a configration file More...
Real	factorial (double x)
	Factorial using recursion. More...
void	imresize (double **X, int Nx, int Ny, int nx, int ny, double **Y)
	Resizes 2D data using bilinear interpolation. More...
double **	calculateZernikePolynomial (double n, double m, vector< double > x, vector< double > y, double d)
	Calculates Zernike polynomial. More...
void	accumulateZernikePolynomial ()
	Sums up the calculated Zernike polynomials. More...
void	Free2D (oph::Complex< Real > **doublePtr)
	deletes 2D memory array using double pointer More...
void	saveAberration (const char *fname)
	saves the 2D data array of a wave aberration into a file More...
void	readAberration (const char *fname)
	reads the 2D data array of a wave aberration from a file More...
virtual bool	loadAsOhc (const char *fname)
	Function to read OHC file. More...
void	ophFree (void)
	Pure virtual function for override in child classes. More...
	ophWaveAberration ()
	Constructor. More...
	~ophWaveAberration ()
	Destructor. More...
bool	readConfig (const char *fname)
	read configuration from a configration file More...
Real	factorial (double x)
	Factorial using recursion. More...
void	imresize (double **X, int Nx, int Ny, int nx, int ny, double **Y)
	Resizes 2D data using bilinear interpolation. More...
double **	calculateZernikePolynomial (double n, double m, vector< double > x, vector< double > y, double d)
	Calculates Zernike polynomial. More...
void	accumulateZernikePolynomial ()
	Sums up the calculated Zernike polynomials. More...
void	Free2D (oph::Complex< Real > **doublePtr)
	deletes 2D memory array using double pointer More...
void	saveAberration (const char *fname)
	saves the 2D data array of a wave aberration into a file More...
void	readAberration (const char *fname)
	reads the 2D data array of a wave aberration from a file More...
virtual bool	loadAsOhc (const char *fname)
	Function to read OHC file. More...
void	ophFree (void)
	Pure virtual function for override in child classes. More...
Public Member Functions inherited from ophRec
	ophRec (void)
	Constructor. More...
void	SaveImage (const char *path, const char *ext="bmp")
void	setConfig (OphRecConfig config)
void	SetMode (unsigned int mode)
OphRecConfig &	getConfig ()
bool	ReconstructImage ()
bool	readConfig (const char *fname)
bool	readImage (const char *path)
bool	readImagePNA (const char *phase, const char *amplitude)
bool	readImageRNI (const char *real, const char *imaginary)
void	Perform_Simulation ()
void	Initialize ()
bool	save (const char *fname, uint8_t bitsperpixel, uchar *src, uint px, uint py)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y, T max, T min)
	ophRec (void)
	Constructor. More...
void	SaveImage (const char *path, const char *ext="bmp")
void	setConfig (OphRecConfig config)
void	SetMode (unsigned int mode)
OphRecConfig &	getConfig ()
bool	ReconstructImage ()
bool	readConfig (const char *fname)
bool	readImage (const char *path)
bool	readImagePNA (const char *phase, const char *amplitude)
bool	readImageRNI (const char *real, const char *imaginary)
void	Perform_Simulation ()
void	Initialize ()
bool	save (const char *fname, uint8_t bitsperpixel, uchar *src, uint px, uint py)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y, T max, T min)
vector< uchar * > &	getNormalizedBuffer ()
	ophRec (void)
	Constructor. More...
void	SaveImage (const char *path, const char *ext="bmp")
void	setConfig (OphRecConfig config)
void	SetMode (unsigned int mode)
OphRecConfig &	getConfig ()
bool	ReconstructImage ()
bool	readConfig (const char *fname)
bool	readImage (const char *path)
bool	readImagePNA (const char *phase, const char *amplitude)
bool	readImageRNI (const char *real, const char *imaginary)
void	Perform_Simulation ()
void	Initialize ()
bool	save (const char *fname, uint8_t bitsperpixel, uchar *src, uint px, uint py)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y, T max, T min)
	ophRec (void)
	Constructor. More...
void	SaveImage (const char *path, const char *ext="bmp")
void	setConfig (OphRecConfig config)
void	SetMode (unsigned int mode)
OphRecConfig &	getConfig ()
bool	ReconstructImage ()
bool	readConfig (const char *fname)
bool	readImage (const char *path)
bool	readImagePNA (const char *phase, const char *amplitude)
bool	readImageRNI (const char *real, const char *imaginary)
void	Perform_Simulation ()
void	Initialize ()
bool	save (const char *fname, uint8_t bitsperpixel, uchar *src, uint px, uint py)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y)
template<typename T >
void	normalize (T *src, uchar *dst, int x, int y, T max, T min)
vector< uchar * > &	getNormalizedBuffer ()
Public Member Functions inherited from Openholo
	Openholo (void)
	Constructor. More...
virtual bool	saveAsImg (const char *fname, uint8_t bitsperpixel, uchar *src, int width, int height)
	Function for creating image files. More...
virtual uchar *	loadAsImg (const char *fname)
	Function for loading image files. More...
virtual bool	saveAsOhc (const char *fname)
	Function to write OHC file More...
Complex< Real > **	getComplexField (void)
	Function for getting the complex field. More...
OphConfig &	getContext (void)
	Function for getting the current context. More...
ImageConfig &	getImageConfig ()
	Function for getting the image config. More...
void	setPixelNumber (ivec2 n)
	Function for setting the output resolution. More...
void	setPixelNumber (int width, int height)
void	setPixelPitch (vec2 p)
	Function for setting the output pixel pitch. More...
void	setPixelPitch (Real pitchX, Real pitchY)
void	setWaveLength (Real w, const uint idx=0)
	Function for setting the wave length. More...
void	setWaveNum (int num)
	Function for setting the wave number. More...
void	setOffset (ivec2 offset)
	Function for setting the offset. More...
void	setImageMerge (bool merge)
	Function for setting the image merge(true or false) More...
void	setImageRotate (bool rotate)
	Function for setting the image rotate(true or false) More...
void	setImageFlip (int flip)
	Function for setting the image flip. More...
void	setMaxThreadNum (int num)
	Function for setting the max thread num. More...
int	getMaxThreadNum ()
	Function for getting the max thread num. More...
bool	mergeColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate RGB image from each grayscale image. More...
bool	separateColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate each grayscale image from RGB image. More...
	Openholo (void)
	Constructor. More...
virtual bool	saveAsImg (const char *fname, uint8_t bitsperpixel, uchar *src, int width, int height)
	Function for creating image files. More...
virtual uchar *	loadAsImg (const char *fname)
	Function for loading image files. More...
virtual bool	saveAsOhc (const char *fname)
	Function to write OHC file More...
Complex< Real > **	getComplexField (void)
	Function for getting the complex field. More...
OphConfig &	getContext (void)
	Function for getting the current context. More...
ImageConfig &	getImageConfig ()
	Function for getting the image config. More...
void	setPixelNumber (ivec2 n)
	Function for setting the output resolution. More...
void	setPixelNumber (int width, int height)
void	setPixelPitch (vec2 p)
	Function for setting the output pixel pitch. More...
void	setPixelPitch (Real pitchX, Real pitchY)
void	setWaveLength (Real w, const uint idx=0)
	Function for setting the wave length. More...
void	setWaveNum (int num)
	Function for setting the wave number. More...
void	setOffset (ivec2 offset)
	Function for setting the offset. More...
void	setImageMerge (bool merge)
	Function for setting the image merge(true or false) More...
void	setImageRotate (bool rotate)
	Function for setting the image rotate(true or false) More...
void	setImageFlip (int flip)
	Function for setting the image flip. More...
void	setMaxThreadNum (int num)
	Function for setting the max thread num. More...
int	getMaxThreadNum ()
	Function for getting the max thread num. More...
bool	mergeColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate RGB image from each grayscale image. More...
bool	separateColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate each grayscale image from RGB image. More...
	Openholo (void)
	Constructor. More...
virtual bool	saveAsImg (const char *fname, uint8_t bitsperpixel, uchar *src, int width, int height)
	Function for creating image files. More...
virtual uchar *	loadAsImg (const char *fname)
	Function for loading image files. More...
virtual bool	saveAsOhc (const char *fname)
	Function to write OHC file More...
Complex< Real > **	getComplexField (void)
	Function for getting the complex field. More...
OphConfig &	getContext (void)
	Function for getting the current context. More...
ImageConfig &	getImageConfig ()
	Function for getting the image config. More...
void	setPixelNumber (ivec2 n)
	Function for setting the output resolution. More...
void	setPixelNumber (int width, int height)
void	setPixelPitch (vec2 p)
	Function for setting the output pixel pitch. More...
void	setPixelPitch (Real pitchX, Real pitchY)
void	setWaveLength (Real w, const uint idx=0)
	Function for setting the wave length. More...
void	setWaveNum (int num)
	Function for setting the wave number. More...
void	setOffset (ivec2 offset)
	Function for setting the offset. More...
void	setImageMerge (bool merge)
	Function for setting the image merge(true or false) More...
void	setImageRotate (bool rotate)
	Function for setting the image rotate(true or false) More...
void	setImageFlip (int flip)
	Function for setting the image flip. More...
void	setMaxThreadNum (int num)
	Function for setting the max thread num. More...
int	getMaxThreadNum ()
	Function for getting the max thread num. More...
bool	mergeColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate RGB image from each grayscale image. More...
bool	separateColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate each grayscale image from RGB image. More...
	Openholo (void)
	Constructor. More...
virtual bool	saveAsImg (const char *fname, uint8_t bitsperpixel, uchar *src, int width, int height)
	Function for creating image files. More...
virtual uchar *	loadAsImg (const char *fname)
	Function for loading image files. More...
virtual bool	saveAsOhc (const char *fname)
	Function to write OHC file More...
Complex< Real > **	getComplexField (void)
	Function for getting the complex field. More...
OphConfig &	getContext (void)
	Function for getting the current context. More...
ImageConfig &	getImageConfig ()
	Function for getting the image config. More...
void	setPixelNumber (ivec2 n)
	Function for setting the output resolution. More...
void	setPixelNumber (int width, int height)
void	setPixelPitch (vec2 p)
	Function for setting the output pixel pitch. More...
void	setPixelPitch (Real pitchX, Real pitchY)
void	setWaveLength (Real w, const uint idx=0)
	Function for setting the wave length. More...
void	setWaveNum (int num)
	Function for setting the wave number. More...
void	setOffset (ivec2 offset)
	Function for setting the offset. More...
void	setImageMerge (bool merge)
	Function for setting the image merge(true or false) More...
void	setImageRotate (bool rotate)
	Function for setting the image rotate(true or false) More...
void	setImageFlip (int flip)
	Function for setting the image flip. More...
void	setMaxThreadNum (int num)
	Function for setting the max thread num. More...
int	getMaxThreadNum ()
	Function for getting the max thread num. More...
bool	mergeColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate RGB image from each grayscale image. More...
bool	separateColor (int idx, int width, int height, uchar *src, uchar *dst)
	Function for generate each grayscale image from RGB image. More...
Public Member Functions inherited from Base
	Base (void)
	Constructor. More...
unsigned long	addRef (void)
	If referenced this(Base's child, not abstract class) instance, must call this method. More...
unsigned long	release (void)
	Call release() when reference is finished. More...
	Base (void)
	Constructor. More...
unsigned long	addRef (void)
	If referenced this(Base's child, not abstract class) instance, must call this method. More...
unsigned long	release (void)
	Call release() when reference is finished. More...
	Base (void)
	Constructor. More...
unsigned long	addRef (void)
	If referenced this(Base's child, not abstract class) instance, must call this method. More...
unsigned long	release (void)
	Call release() when reference is finished. More...
	Base (void)
	Constructor. More...
unsigned long	addRef (void)
	If referenced this(Base's child, not abstract class) instance, must call this method. More...
unsigned long	release (void)
	Call release() when reference is finished. More...

Public Attributes
oph::uint	resolutionX
oph::uint	resolutionY
oph::Complex< Real > **	complex_W
	double pointer of the 2D data array of a wave aberration More...

Additional Inherited Members
Protected Member Functions inherited from ophRec
virtual	~ophRec (void)
	Destructor. More...
void	Clear ()
void	GetPupilFieldFromHologram ()
void	GetPupilFieldFromVWHologram ()
void	Propagation_Fresnel_FFT (int chnum)
void	ASM_Propagation ()
void	ASM_Propagation_GPU ()
void	GetPupilFieldImage (Complex< Real > *src, double *dst, int pnx, int pny, double ppx, double ppy, double scaleX, double scaleY)
void	getVarname (int vtr, vec3 &var_vals, std::string &varname2)
virtual	~ophRec (void)
	Destructor. More...
void	Clear ()
void	GetPupilFieldFromHologram ()
void	GetPupilFieldFromVWHologram ()
void	Propagation_Fresnel_FFT (int chnum)
void	ASM_Propagation ()
void	ASM_Propagation_GPU ()
void	GetPupilFieldImage (Complex< Real > *src, double *dst, int pnx, int pny, double ppx, double ppy, double scaleX, double scaleY)
void	getVarname (int vtr, vec3 &var_vals, std::string &varname2)
virtual	~ophRec (void)
	Destructor. More...
void	Clear ()
void	GetPupilFieldFromHologram ()
void	GetPupilFieldFromVWHologram ()
void	Propagation_Fresnel_FFT (int chnum)
void	ASM_Propagation ()
void	ASM_Propagation_GPU ()
void	GetPupilFieldImage (Complex< Real > *src, double *dst, int pnx, int pny, double ppx, double ppy, double scaleX, double scaleY)
void	getVarname (int vtr, vec3 &var_vals, std::string &varname2)
virtual	~ophRec (void)
	Destructor. More...
void	Clear ()
void	GetPupilFieldFromHologram ()
void	GetPupilFieldFromVWHologram ()
void	Propagation_Fresnel_FFT (int chnum)
void	ASM_Propagation ()
void	ASM_Propagation_GPU ()
void	GetPupilFieldImage (Complex< Real > *src, double *dst, int pnx, int pny, double ppx, double ppy, double scaleX, double scaleY)
void	getVarname (int vtr, vec3 &var_vals, std::string &varname2)
Protected Member Functions inherited from Openholo
virtual	~Openholo (void)=0
	Destructor. More...
bool	checkExtension (const char *fname, const char *ext)
	Functions for extension checking. More...
bool	loadAsImgUpSideDown (const char *fname, uchar *dst)
	Function for loading image files | Output image data upside down. More...
bool	getImgSize (int &w, int &h, int &bytesperpixel, const char *fname)
	Function for getting the image size. More...
void	imgScaleBilinear (uchar *src, uchar *dst, int w, int h, int neww, int newh, int channels=1)
	Function for change image size. More...
void	convertToFormatGray8 (uchar *src, uchar *dst, int w, int h, int bytesperpixel)
	Function for convert image format to gray8. More...
void	fft1 (int n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 1-dimension operations inside Openholo. More...
void	fft2 (ivec2 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 2-dimension operations inside Openholo. More...
void	fft3 (ivec3 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 3-dimension operations inside Openholo. More...
void	fftExecute (Complex< Real > *out, bool bReverse=false)
	Execution functions to be called after fft1, fft2, and fft3. More...
void	fftFree (void)
	Resource release method. More...
void	fftInit2D (ivec2 size, int sign, unsigned int flag)
	initialize method for 2D FFT More...
void	fft2 (Complex< Real > *src, Complex< Real > *dst, int nx, int ny, int type, bool bNormalized=false)
	Convert data from the spatial domain to the frequency domain using 2D FFT on CPU. More...
void	fftShift (int nx, int ny, Complex< Real > *input, Complex< Real > *output)
	Swap the top-left quadrant of data with the bottom-right , and the top-right quadrant with the bottom-left. More...
void	setPixelNumberOHC (const ivec2 pixel_number)
	getter/setter for OHC file read and write More...
void	setPixelPitchOHC (const vec2 pixel_pitch)
void	setWavelengthOHC (const Real wavelength, const LenUnit wavelength_unit)
void	setWaveLengthNumOHC (const uint wavelength_num)
void	setColorTypeOHC (const ColorType color_type)
void	setColorArrangeOHC (const ColorArran color_arrange)
void	setWaveLengthUnitOHC (const LenUnit length_unit)
void	setFieldEncodingOHC (const FldStore field_store, const FldCodeType field_code_type)
void	setPhaseEncodingOHC (const BPhaseCode phase_code, const vec2 phase_code_range)
void	addWaveLengthNComplexFieldDataOHC (const Real wavelength, const OphComplexField &complex_field)
	Function to add ComplexField when adding wavelength data. More...
void	addWaveLengthOHC (const Real wavelength)
void	addComplexFieldDataOHC (const OphComplexField &complex_field)
void	getPixelNumberOHC (ivec2 &pixel_number)
void	getPixelPitchOHC (vec2 &pixel_pitch)
void	getWavelengthOHC (vector< Real > &wavelength)
void	getWaveLengthNumOHC (uint &wavelength_num)
void	getColorTypeOHC (ColorType &color_type)
void	getColorArrangeOHC (ColorArran &color_arrange)
void	getWaveLengthUnitOHC (LenUnit &length_unit)
void	getComplexFieldDataOHC (Complex< Real > **cmplx, uint wavelen_idx)
void	getComplexFieldDataOHC (OphComplexField &cmplx, uint wavelen_idx)
virtual	~Openholo (void)=0
	Destructor. More...
bool	checkExtension (const char *fname, const char *ext)
	Functions for extension checking. More...
bool	loadAsImgUpSideDown (const char *fname, uchar *dst)
	Function for loading image files | Output image data upside down. More...
bool	getImgSize (int &w, int &h, int &bytesperpixel, const char *fname)
	Function for getting the image size. More...
void	imgScaleBilinear (uchar *src, uchar *dst, int w, int h, int neww, int newh, int channels=1)
	Function for change image size. More...
void	convertToFormatGray8 (uchar *src, uchar *dst, int w, int h, int bytesperpixel)
	Function for convert image format to gray8. More...
void	fft1 (int n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 1-dimension operations inside Openholo. More...
void	fft2 (ivec2 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 2-dimension operations inside Openholo. More...
void	fft3 (ivec3 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 3-dimension operations inside Openholo. More...
void	fftExecute (Complex< Real > *out, bool bReverse=false)
	Execution functions to be called after fft1, fft2, and fft3. More...
void	fftFree (void)
	Resource release method. More...
void	fftInit2D (ivec2 size, int sign, unsigned int flag)
	initialize method for 2D FFT More...
void	fft2 (Complex< Real > *src, Complex< Real > *dst, int nx, int ny, int type, bool bNormalized=false)
	Convert data from the spatial domain to the frequency domain using 2D FFT on CPU. More...
void	fftShift (int nx, int ny, Complex< Real > *input, Complex< Real > *output)
	Swap the top-left quadrant of data with the bottom-right , and the top-right quadrant with the bottom-left. More...
void	setPixelNumberOHC (const ivec2 pixel_number)
	getter/setter for OHC file read and write More...
void	setPixelPitchOHC (const vec2 pixel_pitch)
void	setWavelengthOHC (const Real wavelength, const LenUnit wavelength_unit)
void	setWaveLengthNumOHC (const uint wavelength_num)
void	setColorTypeOHC (const ColorType color_type)
void	setColorArrangeOHC (const ColorArran color_arrange)
void	setWaveLengthUnitOHC (const LenUnit length_unit)
void	setFieldEncodingOHC (const FldStore field_store, const FldCodeType field_code_type)
void	setPhaseEncodingOHC (const BPhaseCode phase_code, const vec2 phase_code_range)
void	addWaveLengthNComplexFieldDataOHC (const Real wavelength, const OphComplexField &complex_field)
	Function to add ComplexField when adding wavelength data. More...
void	addWaveLengthOHC (const Real wavelength)
void	addComplexFieldDataOHC (const OphComplexField &complex_field)
void	getPixelNumberOHC (ivec2 &pixel_number)
void	getPixelPitchOHC (vec2 &pixel_pitch)
void	getWavelengthOHC (vector< Real > &wavelength)
void	getWaveLengthNumOHC (uint &wavelength_num)
void	getColorTypeOHC (ColorType &color_type)
void	getColorArrangeOHC (ColorArran &color_arrange)
void	getWaveLengthUnitOHC (LenUnit &length_unit)
void	getComplexFieldDataOHC (Complex< Real > **cmplx, uint wavelen_idx)
void	getComplexFieldDataOHC (OphComplexField &cmplx, uint wavelen_idx)
virtual	~Openholo (void)=0
	Destructor. More...
bool	checkExtension (const char *fname, const char *ext)
	Functions for extension checking. More...
bool	loadAsImgUpSideDown (const char *fname, uchar *dst)
	Function for loading image files | Output image data upside down. More...
bool	getImgSize (int &w, int &h, int &bytesperpixel, const char *fname)
	Function for getting the image size. More...
void	imgScaleBilinear (uchar *src, uchar *dst, int w, int h, int neww, int newh, int channels=1)
	Function for change image size. More...
void	convertToFormatGray8 (uchar *src, uchar *dst, int w, int h, int bytesperpixel)
	Function for convert image format to gray8. More...
void	fft1 (int n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 1-dimension operations inside Openholo. More...
void	fft2 (ivec2 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 2-dimension operations inside Openholo. More...
void	fft3 (ivec3 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 3-dimension operations inside Openholo. More...
void	fftExecute (Complex< Real > *out, bool bReverse=false)
	Execution functions to be called after fft1, fft2, and fft3. More...
void	fftFree (void)
	Resource release method. More...
void	fftInit2D (ivec2 size, int sign, unsigned int flag)
	initialize method for 2D FFT More...
void	fft2 (Complex< Real > *src, Complex< Real > *dst, int nx, int ny, int type, bool bNormalized=false)
	Convert data from the spatial domain to the frequency domain using 2D FFT on CPU. More...
void	fftShift (int nx, int ny, Complex< Real > *input, Complex< Real > *output)
	Swap the top-left quadrant of data with the bottom-right , and the top-right quadrant with the bottom-left. More...
void	setPixelNumberOHC (const ivec2 pixel_number)
	getter/setter for OHC file read and write More...
void	setPixelPitchOHC (const vec2 pixel_pitch)
void	setWavelengthOHC (const Real wavelength, const LenUnit wavelength_unit)
void	setWaveLengthNumOHC (const uint wavelength_num)
void	setColorTypeOHC (const ColorType color_type)
void	setColorArrangeOHC (const ColorArran color_arrange)
void	setWaveLengthUnitOHC (const LenUnit length_unit)
void	setFieldEncodingOHC (const FldStore field_store, const FldCodeType field_code_type)
void	setPhaseEncodingOHC (const BPhaseCode phase_code, const vec2 phase_code_range)
void	addWaveLengthNComplexFieldDataOHC (const Real wavelength, const OphComplexField &complex_field)
	Function to add ComplexField when adding wavelength data. More...
void	addWaveLengthOHC (const Real wavelength)
void	addComplexFieldDataOHC (const OphComplexField &complex_field)
void	getPixelNumberOHC (ivec2 &pixel_number)
void	getPixelPitchOHC (vec2 &pixel_pitch)
void	getWavelengthOHC (vector< Real > &wavelength)
void	getWaveLengthNumOHC (uint &wavelength_num)
void	getColorTypeOHC (ColorType &color_type)
void	getColorArrangeOHC (ColorArran &color_arrange)
void	getWaveLengthUnitOHC (LenUnit &length_unit)
void	getComplexFieldDataOHC (Complex< Real > **cmplx, uint wavelen_idx)
void	getComplexFieldDataOHC (OphComplexField &cmplx, uint wavelen_idx)
virtual	~Openholo (void)=0
	Destructor. More...
bool	checkExtension (const char *fname, const char *ext)
	Functions for extension checking. More...
bool	loadAsImgUpSideDown (const char *fname, uchar *dst)
	Function for loading image files | Output image data upside down. More...
bool	getImgSize (int &w, int &h, int &bytesperpixel, const char *fname)
	Function for getting the image size. More...
void	imgScaleBilinear (uchar *src, uchar *dst, int w, int h, int neww, int newh, int channels=1)
	Function for change image size. More...
void	convertToFormatGray8 (uchar *src, uchar *dst, int w, int h, int bytesperpixel)
	Function for convert image format to gray8. More...
void	fft1 (int n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 1-dimension operations inside Openholo. More...
void	fft2 (ivec2 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 2-dimension operations inside Openholo. More...
void	fft3 (ivec3 n, Complex< Real > *in, int sign=OPH_FORWARD, uint flag=OPH_ESTIMATE)
	Functions for performing fftw 3-dimension operations inside Openholo. More...
void	fftExecute (Complex< Real > *out, bool bReverse=false)
	Execution functions to be called after fft1, fft2, and fft3. More...
void	fftFree (void)
	Resource release method. More...
void	fftInit2D (ivec2 size, int sign, unsigned int flag)
	initialize method for 2D FFT More...
void	fft2 (Complex< Real > *src, Complex< Real > *dst, int nx, int ny, int type, bool bNormalized=false)
	Convert data from the spatial domain to the frequency domain using 2D FFT on CPU. More...
void	fftShift (int nx, int ny, Complex< Real > *input, Complex< Real > *output)
	Swap the top-left quadrant of data with the bottom-right , and the top-right quadrant with the bottom-left. More...
void	setPixelNumberOHC (const ivec2 pixel_number)
	getter/setter for OHC file read and write More...
void	setPixelPitchOHC (const vec2 pixel_pitch)
void	setWavelengthOHC (const Real wavelength, const LenUnit wavelength_unit)
void	setWaveLengthNumOHC (const uint wavelength_num)
void	setColorTypeOHC (const ColorType color_type)
void	setColorArrangeOHC (const ColorArran color_arrange)
void	setWaveLengthUnitOHC (const LenUnit length_unit)
void	setFieldEncodingOHC (const FldStore field_store, const FldCodeType field_code_type)
void	setPhaseEncodingOHC (const BPhaseCode phase_code, const vec2 phase_code_range)
void	addWaveLengthNComplexFieldDataOHC (const Real wavelength, const OphComplexField &complex_field)
	Function to add ComplexField when adding wavelength data. More...
void	addWaveLengthOHC (const Real wavelength)
void	addComplexFieldDataOHC (const OphComplexField &complex_field)
void	getPixelNumberOHC (ivec2 &pixel_number)
void	getPixelPitchOHC (vec2 &pixel_pitch)
void	getWavelengthOHC (vector< Real > &wavelength)
void	getWaveLengthNumOHC (uint &wavelength_num)
void	getColorTypeOHC (ColorType &color_type)
void	getColorArrangeOHC (ColorArran &color_arrange)
void	getWaveLengthUnitOHC (LenUnit &length_unit)
void	getComplexFieldDataOHC (Complex< Real > **cmplx, uint wavelen_idx)
void	getComplexFieldDataOHC (OphComplexField &cmplx, uint wavelen_idx)
Protected Member Functions inherited from Base
virtual	~Base (void)
	Destructor. More...
virtual	~Base (void)
	Destructor. More...
virtual	~Base (void)
	Destructor. More...
virtual	~Base (void)
	Destructor. More...
Protected Attributes inherited from Openholo
OphConfig	context_
ResolutionConfig	resCfg
ImageConfig	imgCfg
Complex< Real > **	complex_H
ImgEncoderOhc *	OHC_encoder
	OHC file format Variables for read and write. More...
ImgDecoderOhc *	OHC_decoder
Protected Attributes inherited from Base
unsigned long	refCnt

Detailed Description

Wave Aberration module.

Author

Minsik Park

Definition at line 94 of file ophWaveAberration.h.

Constructor & Destructor Documentation

ophWaveAberration() [1/4]

ophWaveAberration::ophWaveAberration

(

)

Constructor.

Definition at line 59 of file ophWaveAberration.cpp.

~ophWaveAberration() [1/4]

ophWaveAberration::~ophWaveAberration

(

)

Destructor.

Definition at line 72 of file ophWaveAberration.cpp.

ophWaveAberration() [2/4]

ophWaveAberration::ophWaveAberration

(

)

Constructor.

~ophWaveAberration() [2/4]

ophWaveAberration::~ophWaveAberration

(

)

Destructor.

ophWaveAberration() [3/4]

ophWaveAberration::ophWaveAberration

(

)

Constructor.

~ophWaveAberration() [3/4]

ophWaveAberration::~ophWaveAberration

(

)

Destructor.

ophWaveAberration() [4/4]

ophWaveAberration::ophWaveAberration

(

)

Constructor.

~ophWaveAberration() [4/4]

ophWaveAberration::~ophWaveAberration

(

)

Destructor.

Member Function Documentation

accumulateZernikePolynomial() [1/4]

void ophWaveAberration::accumulateZernikePolynomial

(

)

Sums up the calculated Zernike polynomials.

Definition at line 182 of file ophWaveAberration.cpp.

accumulateZernikePolynomial() [2/4]

void ophWaveAberration::accumulateZernikePolynomial

(

)

Sums up the calculated Zernike polynomials.

accumulateZernikePolynomial() [3/4]

void ophWaveAberration::accumulateZernikePolynomial

(

)

Sums up the calculated Zernike polynomials.

accumulateZernikePolynomial() [4/4]

void ophWaveAberration::accumulateZernikePolynomial

(

)

Sums up the calculated Zernike polynomials.

calculateZernikePolynomial() [1/4]

double ** ophWaveAberration::calculateZernikePolynomial	(	double	n,
		double	m,
		vector< double >	x,
		vector< double >	y,
		double	d
	)

Calculates Zernike polynomial.

Parameters

n	order of the radial term of Zernike polynomial
m	frequency of the sinusoidal component of Zernike polynomial
x	resolution in y axis of the exit pupil
y	resolution in y axis of the exit pupil
d	diameter of aperture of the exit pupil

Definition at line 78 of file ophWaveAberration.cpp.

calculateZernikePolynomial() [2/4]

double** ophWaveAberration::calculateZernikePolynomial	(	double	n,
		double	m,
		vector< double >	x,
		vector< double >	y,
		double	d
	)

Calculates Zernike polynomial.

Parameters

n	order of the radial term of Zernike polynomial
m	frequency of the sinusoidal component of Zernike polynomial
x	resolution in y axis of the exit pupil
y	resolution in y axis of the exit pupil
d	diameter of aperture of the exit pupil

calculateZernikePolynomial() [3/4]

double** ophWaveAberration::calculateZernikePolynomial	(	double	n,
		double	m,
		vector< double >	x,
		vector< double >	y,
		double	d
	)

Calculates Zernike polynomial.

Parameters

n	order of the radial term of Zernike polynomial
m	frequency of the sinusoidal component of Zernike polynomial
x	resolution in y axis of the exit pupil
y	resolution in y axis of the exit pupil
d	diameter of aperture of the exit pupil

calculateZernikePolynomial() [4/4]

double** ophWaveAberration::calculateZernikePolynomial	(	double	n,
		double	m,
		vector< double >	x,
		vector< double >	y,
		double	d
	)

Calculates Zernike polynomial.

Parameters

n	order of the radial term of Zernike polynomial
m	frequency of the sinusoidal component of Zernike polynomial
x	resolution in y axis of the exit pupil
y	resolution in y axis of the exit pupil
d	diameter of aperture of the exit pupil

factorial() [1/4]

Real ophWaveAberration::factorial

(

double

x

)

Factorial using recursion.

Parameters

x	a number of factorial

factorial() [2/4]

double ophWaveAberration::factorial ( double  x )

inline

Factorial using recursion.

Parameters

x	a number of factorial

Definition at line 50 of file ophWaveAberration.cpp.

factorial() [3/4]

Real ophWaveAberration::factorial

(

double

x

)

Factorial using recursion.

Parameters

x	a number of factorial

factorial() [4/4]

Real ophWaveAberration::factorial

(

double

x

)

Factorial using recursion.

Parameters

x	a number of factorial

Free2D() [1/4]

void ophWaveAberration::Free2D

(

oph::Complex< Real > **

doublePtr

)

deletes 2D memory array using double pointer

Free2D() [2/4]

void ophWaveAberration::Free2D

(

oph::Complex< Real > **

doublePtr

)

deletes 2D memory array using double pointer

Free2D() [3/4]

void ophWaveAberration::Free2D

(

oph::Complex< Real > **

doublePtr

)

deletes 2D memory array using double pointer

Definition at line 360 of file ophWaveAberration.cpp.

Free2D() [4/4]

void ophWaveAberration::Free2D

(

oph::Complex< Real > **

doublePtr

)

deletes 2D memory array using double pointer

imresize() [1/4]

void ophWaveAberration::imresize	(	double **	X,
		int	Nx,
		int	Ny,
		int	nx,
		int	ny,
		double **	Y
	)

Resizes 2D data using bilinear interpolation.

Parameters

X	2D source image
Nx	resolution in x axis of source image
Ny	resolution in y axis of source image
nx	resolution in x axis target image
ny	resolution in y axis target image
ny	2D target image

imresize() [2/4]

void ophWaveAberration::imresize	(	double **	X,
		int	Nx,
		int	Ny,
		int	nx,
		int	ny,
		double **	Y
	)

Resizes 2D data using bilinear interpolation.

Parameters

X	2D source image
Nx	resolution in x axis of source image
Ny	resolution in y axis of source image
nx	resolution in x axis target image
ny	resolution in y axis target image
ny	2D target image

imresize() [3/4]

void ophWaveAberration::imresize	(	double **	X,
		int	Nx,
		int	Ny,
		int	nx,
		int	ny,
		double **	Y
	)

Resizes 2D data using bilinear interpolation.

Parameters

X	2D source image
Nx	resolution in x axis of source image
Ny	resolution in y axis of source image
nx	resolution in x axis target image
ny	resolution in y axis target image
ny	2D target image

Definition at line 153 of file ophWaveAberration.cpp.

imresize() [4/4]

void ophWaveAberration::imresize	(	double **	X,
		int	Nx,
		int	Ny,
		int	nx,
		int	ny,
		double **	Y
	)

Resizes 2D data using bilinear interpolation.

Parameters

X	2D source image
Nx	resolution in x axis of source image
Ny	resolution in y axis of source image
nx	resolution in x axis target image
ny	resolution in y axis target image
ny	2D target image

loadAsOhc() [1/4]

bool ophWaveAberration::loadAsOhc ( const char *  fname )

virtual

Function to read OHC file.

Parameters

[in]

fname

File name

Returns

Type: bool
If the succeeds to load OHC file, the return value is true.
If the fails to load OHC file, the return value is false.

Reimplemented from Openholo.

Definition at line 486 of file ophWaveAberration.cpp.

loadAsOhc() [2/4]

virtual bool ophWaveAberration::loadAsOhc ( const char *  fname )

virtual

Function to read OHC file.

Parameters

[in]

fname

File name

Returns

Type: bool
If the succeeds to load OHC file, the return value is true.
If the fails to load OHC file, the return value is false.

Reimplemented from Openholo.

loadAsOhc() [3/4]

virtual bool ophWaveAberration::loadAsOhc ( const char *  fname )

virtual

Function to read OHC file.

Parameters

[in]

fname

File name

Returns

Type: bool
If the succeeds to load OHC file, the return value is true.
If the fails to load OHC file, the return value is false.

Reimplemented from Openholo.

loadAsOhc() [4/4]

virtual bool ophWaveAberration::loadAsOhc ( const char *  fname )

virtual

Function to read OHC file.

Parameters

[in]

fname

File name

Returns

Type: bool
If the succeeds to load OHC file, the return value is true.
If the fails to load OHC file, the return value is false.

Reimplemented from Openholo.

ophFree() [1/4]

void ophWaveAberration::ophFree ( void  )

virtual

Pure virtual function for override in child classes.

Reimplemented from ophRec.

ophFree() [2/4]

void ophWaveAberration::ophFree ( void  )

virtual

Pure virtual function for override in child classes.

Reimplemented from ophRec.

Definition at line 368 of file ophWaveAberration.cpp.

ophFree() [3/4]

void ophWaveAberration::ophFree ( void  )

virtual

Pure virtual function for override in child classes.

Reimplemented from ophRec.

ophFree() [4/4]

void ophWaveAberration::ophFree ( void  )

virtual

Pure virtual function for override in child classes.

Reimplemented from ophRec.

readAberration() [1/4]

void ophWaveAberration::readAberration

(

const char *

fname

)

reads the 2D data array of a wave aberration from a file

Parameters

fname

a path name of a file to save a wave aberration

Definition at line 474 of file ophWaveAberration.cpp.

readAberration() [2/4]

void ophWaveAberration::readAberration

(

const char *

fname

)

reads the 2D data array of a wave aberration from a file

Parameters

fname

a path name of a file to save a wave aberration

readAberration() [3/4]

void ophWaveAberration::readAberration

(

const char *

fname

)

reads the 2D data array of a wave aberration from a file

Parameters

fname

a path name of a file to save a wave aberration

readAberration() [4/4]

void ophWaveAberration::readAberration

(

const char *

fname

)

reads the 2D data array of a wave aberration from a file

Parameters

fname

a path name of a file to save a wave aberration

readConfig() [1/4]

bool ophWaveAberration::readConfig

(

const char *

fname

)

read configuration from a configration file

Parameters

fname

a path name of a configration file

readConfig() [2/4]

bool ophWaveAberration::readConfig

(

const char *

fname

)

read configuration from a configration file

Parameters

fname

a path name of a configration file

Definition at line 375 of file ophWaveAberration.cpp.

readConfig() [3/4]

bool ophWaveAberration::readConfig

(

const char *

fname

)

read configuration from a configration file

Parameters

fname

a path name of a configration file

readConfig() [4/4]

bool ophWaveAberration::readConfig

(

const char *

fname

)

read configuration from a configration file

Parameters

fname

a path name of a configration file

saveAberration() [1/4]

void ophWaveAberration::saveAberration

(

const char *

fname

)

saves the 2D data array of a wave aberration into a file

Parameters

fname

a path name of a file to save a wave aberration

saveAberration() [2/4]

void ophWaveAberration::saveAberration

(

const char *

fname

)

saves the 2D data array of a wave aberration into a file

Parameters

fname

a path name of a file to save a wave aberration

saveAberration() [3/4]

void ophWaveAberration::saveAberration

(

const char *

fname

)

saves the 2D data array of a wave aberration into a file

Parameters

fname

a path name of a file to save a wave aberration

Definition at line 467 of file ophWaveAberration.cpp.

saveAberration() [4/4]

void ophWaveAberration::saveAberration

(

const char *

fname

)

saves the 2D data array of a wave aberration into a file

Parameters

fname

a path name of a file to save a wave aberration

Member Data Documentation

complex_W

oph::Complex< Real > ** ophWaveAberration::complex_W

double pointer of the 2D data array of a wave aberration

Definition at line 136 of file ophWaveAberration.h.

resolutionX

oph::uint ophWaveAberration::resolutionX

Parameters

resolution

in x axis of the exit pupil

Definition at line 128 of file ophWaveAberration.h.

resolutionY

oph::uint ophWaveAberration::resolutionY

Parameters

resolution

in y axis of the exit pupil

Definition at line 132 of file ophWaveAberration.h.

---

The documentation for this class was generated from the following files:

• D:/Sources/Openholo/Openholo/build/include/ophWaveAberration.h
• D:/Sources/Openholo/Openholo/ophrec/src/ophWaveAberration.cpp